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Description of theoretical and empirical data–based computer simulations.

 
Simulation scenario Study focus Results presentation
General resampling Difference among cases (combination of parameters: number of QTL, QTL effect, total marker number, and heritability) and a total of 50 independent runs were conducted for each case Fig. 1
Multiple resampling Multiple resampling of different proportions of markers from each individual case. A single run was randomly chosen for each case and 10 repetitions of resampling were randomly conducted at each marker proportion Fig. 2–3
Empirical data (maize and canine) Multiple resampling of different proportions of markers from each dataset and 10 repetitions of resampling were conducted at each marker proportion Fig. 5–8
QTL, quantitative trait loci.