Figure 1.
Figure 1.

Number of sequence reads obtained for each individual in the pooled DNA samples. Pool-I was only sequenced using 454-pyrosequencing. Pool-II was sequenced with both 454-pyrosequencing and Illumina sequencing. Parental DNA samples were pooled at twice the concentration of the recombinant inbred line (RIL) DNA samples, which were pooled in equimolar concentrations. Parental DNA samples were present in both pools but are shown as a sum of both pools in the figure.

 


Figure 2.
Figure 2.

Depth of coverage of in silco predicted EcoRI-EcoRI and EcoRI-BfaI restriction fragments detected in the parental 454-pyrosequencing dataset. Target fragment size was 450 to 650 bp.

 


Figure 3.
Figure 3.

Collinearity analysis of the Arabidopsis physical maps (Mb) and linkage maps (cM) based on single nucleotide polymorphism (SNP) genotyping from 454-pyrosequencing. A depiction of the approximate physical location of the centromeric region is given to the side of the x axis, while a depiction of the linkage group provide beneath the y axis. Chr, chromosome.

 


Figure 4.
Figure 4.

Collinearity analysis of the Arabidopsis physical maps (Mb) and linkage maps (cM) based on single nucleotide polymorphism (SNP) genotyping from Illumina sequencing. A depiction of the approximate physical location of the centromeric region is given to the side of the x axis, while a depiction of the linkage group provide beneath the y axis. Chr, chromosome.