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Gene and marker annotations of soybean chromosome 14 between 45,750,000 bp and 49,000,000 bp.

Gene name Marker name Position Gene annotation
Glyma14g36630.1 45988517..45993144 Leucine-rich repeat receptor-like kinase
Glyma14g36660.1 46001094..46004267 Leucine-rich repeat receptor-like kinase
Glyma14g36810.1 46091207..46093272 Leucine-rich repeat receptor-like kinase
Satt063 46705813..46705956
S156v 46726494..46727093
S156w 46772356..46772567
Glyma14g37590.1 46863817..46868269 Leucine-rich repeat receptor-like kinase
Glyma14g37630.1 46908176..46914671 Leucine-rich repeat receptor-like kinase
A516 46983593..46984402
A593 46983608..46984399
GME 47034693..47035079
Glyma14g37860.1 47141015..47143938 Coiled-coil nucleotide-binding leucine-rich repeat protein
Gm-r-Z20a 47214338..47215135
S156t 47253102..47253291
GMC 47466562..47466808
Glyma14g38390.1 47508501..47512747 Leucine-rich repeat receptor-like kinase
Glyma14g38420.1 47522200..47532508 Nucleotidyltransferase, putative
S156l 47531967..47532194
Glyma14g38430.1 47535945..47538954 Expansin 45, endoglucanase-like
S156g 47550957..47551193
Glyma14g38460.1 47566439..47569354 Transcription factor RF2b, putative
S156i 47570884..47571083
Glyma14g38490.1 47615588..47619943 Transcriptional factor B3, putative
A519F/R 47616322..47617670
S156a 47623366..47623586
S156b 47623609..47623789
S156c 47624441..47624659
NB500pro1 47628799..47628967
NB500pro2 47628799..47628967
Glyma14g38500.1 47630519..47633501 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g38510.1 47648153..47651727 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g38540.1 47670152..47672833 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g38560.1 47691826..47695095 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g38570.1 47701161..47706197 DNA double-strand break repair RAD50 ATPase
S156e 47709881..47710153
Glyma14g38580.1 47721318..47725350 Cinnamate 4-hydroxylase, putative
Glyma14g38590.1 47728270..47730998 Coiled-coil nucleotide-binding leucine-rich repeat protein (partial pseudogene)
BarcSoySSR_14_1417 47738893..47739065
Glyma14g38600.1 47741179..47745790 Translation initiation factor IF5
Glyma14g38610.1 47758657..47760317 AP2 domain transcription factor
Glyma14g38620.1 47764961..47770195 Ubiquitin-conjugating enzyme E2, putative
M3Satt 47769743..47770460
Glyma14g38630.1 47775271..47778947 Leucine-rich repeat receptor-like kinase
M1a 47778362..47779054
S156h 47814988..47815220
Glyma14g38640.1 47800987..47804143 Root phototropism protein, putative
Glyma14g38650.1 47816591..47827883 Leucine-rich repeat receptor-like kinase
RLK650.p1 47823861..47824095
Glyma14g38670.1 47836300..47846561 Leucine-rich repeat receptor-like kinase
Satt560 47849427..47849504
Glyma14g38700.1 47872961..47876633 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g38740.1 47897628..47899939 Coiled-coil nucleotide-binding leucine-rich repeat protein
Glyma14g39180.1 48293479..48297011 Leucine-rich repeat receptor-like kinase
Glyma14g39290.1 48411264..48415224 Leucine-rich repeat receptor-like kinase
Glyma14g39550.1 48641632..48644930 Leucine-rich repeat receptor-like kinase
Glyma14g39690.1 48721778..48724358 Leucine-rich repeat receptor-like kinase
Gene annotation information was retrieved from the soybean gene annotation database, Glyma1.0 (accessible at Phytozome v5.0, [verified 13 Jan. 2011]). Only nucleotide-binding leucine-rich repeat (NB-LRR) and leucine-rich repeat receptor-like kinase (LRR-RLK) genes are presented for the chromosomal region outside of the region delimited by S1561 and RLK650.p1.

View Full Table | Close Full ViewTable 2.

Comparison of the 13 soybean leucine-rich repeat receptor-like kinase (LRR-RLK) genes in the vicinity of Rsv3 to their Arabidopsis thaliana (L.) Heynh. homologues.

Query sequence Subject sequence E value Subfamily
Glyma14g36630 AT5G58300 0 LRR III
Glyma14g36660 AT1G72180 3e–20 LRR XI
Glyma14g36810 AT1G56140 3e–40 LRR VIII-2
Glyma14g37590 AT1G74360 3e–20 LRR X
Glyma14g37630 AT4G18640 e−114 LRR VI
Glyma14g38390 AT4G29450 4e–10 LRR I
Glyma14g38630 AT5G58300 0 LRR III
Glyma14g38650 AT1G06840 0 LRR VIII-1
Glyma14g38670 AT1G06840 0 LRR VIII-1
Glyma14g39180 AT1G56145 6e−71 LRR VIII-2
Glyma14g39290 AT1G66150 0 LRR IX
Glyma14g39550 AT1G48480 0 LRR III
Glyma14g39690 AT1G56120 7e−52 LRR VIII-2
A. thaliana gene that showed the best match in a TBLASTN search against the local protein database, which contains 194 Arabidopsis LRR-RLK sequences reported by Gou et al. (2010), using a predicted soybean LRR-RLK amino acid sequence.
Name of subfamily in the phylogenetic tree constructed using the 194 A. thaliana LRR-RLK sequences, to which the A. thaliana gene homologous to the soybean gene belongs.