View Full Table | Close Full ViewTable 1.

Number of intraspecific single-nucleotide polymorphisms (italic) in Festuca pratensis (Fp), Lolium multiflorum (Lm), and L. perenne (Lp) and corresponding genes (bold) identified using three different reference transcriptomes with all genes or the 6475 near full-length gene set (in parentheses).

 
Reference transcriptome INTRAFp INTRALm INTRALp
Fp 250,929 (113,934) 715,572 (370,524) 529,367 (288,958)
12,910 (5,552) 13,864 (5,966) 13,472 (5,940)
Lm 248,271 (115,390) 750,463 (385,592) 556,027 (303,890)
13,420 (5,750) 15,320 (6,279) 14,717 (6,258)
Lp 249,469 (114,545) 786,791 (388,114) 634,918 (314,057)
13,670 (5,768) 15,368 (6,288) 15,617 (6,321)



View Full Table | Close Full ViewTable 2.

Number of interspecific single-nucleotide polymorphisms (italic) in Festuca pratensis (Fp), Lolium multiflorum (Lm), and L. perenne (Lp) and corresponding genes (bold) in two-way and three-way comparisons identified using three different reference transcriptomes with all genes or the 6475 near full-length gene set (in parentheses).

 
Reference transcriptome Fp–Lm Fp–Lp Lm–Lp Fp-specific Lm-specific Lp-specific
Fp 20,840 (12,517) 20,223 (12,607) 358 (231) 11,603 (7,341) 134 (83) 130 (82)
4,554 (2,510) 4,172 (2,348) 106 (69) 3,183 (1,843) 43 (26) 58 (40)
Lm 21,992 (13,373) 22,540 (14,181) 354 (241) 13,260 (8,406) 122 (85) 127 (83)
4,962 (2,668) 4,648 (2,564) 109 (66) 3,611 (2,030) 45 (25) 62 (39)
Lp 24,765 (13,761) 26,397 (14,952) 472 (274) 15,204 (8,720) 179 (100) 178 (98)
5,343 (2,712) 5,138 (2,641) 139 (81) 3,976 (2,084) 59 (33) 80 (47)



View Full Table | Close Full ViewTable 3.

The number of interspecific single-nucleotide polymorphisms (italic) and corresponding genes (bold) in pairwise comparison of selected Festuca pratensis (FP) and Lolium multiflorum (Lm) genotypes (Fp52, Fp53, or Fp54 vs. Lm51 or Lm52) identified using two different transcriptome references with all genes or with the HQ (high-quality) gene sets per pairwise comparison (in parentheses).

 
Reference transcriptome Fp52 Fp53 Fp54
Fp Lm51 88,660 (49,261) 83,215 (46,518) 60,592 (33,228)
10,072 (5,090) 9,667 (4,951) 7,737 (4,026)
Lm52 79,744 (43,818) 75,810 (41,814) 61,957 (34,096)
9,277 (4,688) 8,988 (4,587) 7,753 (4,021)
Lm Lm51 93,967 (49,920) 86,697 (46,638) 62,052 (33,050)
10,918 (5,090) 10,422 (4,951) 8,370 (4,026)
Lm52 85,456 (44,633) 80,180 (42,332) 63,687 (34,046)
10,168 (4,688) 9,775 (4,587) 8,374 (4,021)